species:   Rhsol
pid:       PID0497
parent:    Rhi-milR-144
paralog:   
locus:     KB317831.1:14326-14406
matures:   ['UGGGAUAUCUGCCUAGGUGAUGGU', 'CAUCCUCUUAGUGCCAGAGGAUUUCCAG']
srr:       SRR1994873
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994873.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994873.cram KB317831.1:14326-14406

24 out of bounds
72 alignments
10 proper strand
9 stranded perfect matches

        ***************************     *******************************          
UUACUCCCUAUGGGAUAUCUGCCUAGGUGAUGGUGCUUUGCAUCAUCCUCUUAGUGCCAGAGGAUUUCCAGGUGGAGUUUG
..(((((((.(((((..((((((((((.((((((((...))))))))..))))).).))))....))))))).)))))...
----------UGGGAUAUCUGCCUAGGUGAUGGU----------------------------------------------- l=24 a=1 c
-------------------------------------------CAUCCUCUUAGUGCCAGAGGAUUUCCAG---------- l=28 a=0 c*
----------UGGGAUAUCUGCCUAGGUGAUGGUG---------------------------------------------- l=25 a=4 ma
------------------------------------------UCAUCCUCUUAGUGCCAGAGGAUUUCCAG---------- l=29 a=0 ma*

----------UGGGAUAUCUGCCUAGGUGAUGG------------------------------------------------ l=23 a=3 
----------UGGGAUAUCUGCCUAGGUGAUGGU----------------------------------------------- l=24 a=1 (c)
----------UGGGAUAUCUGCCUAGGUGAUGGUG---------------------------------------------- l=25 a=4 (ma)
----------UGGGAUAUCUGCCUAGGUGAUGGUu---------------------------------------------- l=25 a=1 
------------------------------------UUUGCAUCAUCCUCUUAGUGC------------------------ l=21 a=1 

mb-01011
ax-1001001
ku-01
ss-111011001000
fn-101
